Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMCAMCPB_2 | 21263 | 21967 | WalR | 6.75e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CMCAMCPB_9 | 13578 | 13384 | CspR | 9.39e-30 | cold shock protein | 83.08 | 98.48 | AAO82613 |
| CMCAMCPB_9 | 13578 | 13381 | CspA | 1.08e-29 | cold shock protein | 83.33 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMCAMCPB_39 | 3351 | 4390 | rep38 | 1042 / 1104 | 87.91 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMCAMCPB_1 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_2 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_3 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_4 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_5 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_6 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_7 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_8 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_9 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_10 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_11 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_12 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_13 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_14 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_15 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_16 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_17 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_18 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_19 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_20 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_21 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_22 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_23 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_24 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_25 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_26 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_27 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_28 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_29 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_30 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_31 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_32 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_33 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_34 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_35 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_36 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_37 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_38 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_39 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_40 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_41 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_42 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_43 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_44 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_45 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_46 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_47 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_48 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_49 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_50 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_51 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_52 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_53 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_54 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_56 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_57 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_58 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_59 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_60 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_61 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_62 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_64 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_65 | 1.0 | 0.0 | 1.0 |
| CMCAMCPB_66 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_67 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_71 | 0.0 | 1.0 | 0.0 |
| CMCAMCPB_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMCAMCPB_2 | 12566 | 20011 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG1886, VOG5051, VOG4556, VOG4568, VOG0204 |
| CMCAMCPB_7 | 4920 | 28305 | False | Siphoviridae | VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
| CMCAMCPB_16 | 8467 | 38733 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841, VOG0198, VOG9671, VOG3643, VOG0044, VOG0586, VOG6005, VOG4799, VOG0514, VOG0226, VOG0283, VOG0685, VOG5073 |
| CMCAMCPB_17 | 3773 | 36301 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0822, VOG4673, VOG5278, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG9888, VOG0602 |
| CMCAMCPB_26 | 2019 | 26207 | False | Siphoviridae | VOG0044, VOG3643, VOG0198, VOG0638, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531 |
Phigaro v2.4.0 (Database: Jan. 2024 release)