Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCADMIDK_35 | 76637 | 75933 | WalR | 7.86e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CCADMIDK_4 | 89111 | 88917 | CspR | 4.27e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CCADMIDK_4 | 89111 | 88914 | CspA | 6.55e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCADMIDK_1 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_2 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_3 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_4 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_5 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_6 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_7 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_8 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_9 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_10 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_11 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_12 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_13 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_14 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_15 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_16 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_17 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_18 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_19 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_20 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_21 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_22 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_23 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_24 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_26 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_27 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_29 | 1.0 | 0.0 | 1.0 |
| CCADMIDK_31 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_32 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_33 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_34 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_35 | 0.0 | 1.0 | 0.0 |
| CCADMIDK_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCADMIDK_16 | 13757 | 15548 | False | Unknown | VOG2154, VOG5944, VOG2154 |
| CCADMIDK_23 | 145150 | 174843 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG0189, VOG11024, VOG4813, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG10608, VOG8870 |
| CCADMIDK_31 | 223815 | 258579 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG9281, VOG4673, VOG4577, VOG6541, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG6394, VOG4548, VOG0321, VOG8925 |
| CCADMIDK_32 | 79278 | 97131 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG11032, VOG4602 |
| CCADMIDK_32 | 102772 | 126631 | False | Siphoviridae | VOG4693, VOG0586, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG8438 |
Phigaro v2.4.0 (Database: Jan. 2024 release)