Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
IEPCNPLB_44160494159790WalR1.38e-114transcriptional regulatory protein84.25100.00EPH95667
IEPCNPLB_1405085405279CspR2.78e-29cold shock protein84.6198.48AAO82613
IEPCNPLB_1405085405282CspA4.26e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
IEPCNPLB_247531688rep28936 / 936100.00CP005948
IEPCNPLB_2926183514rep38908 / 90396.81CP005943
IEPCNPLB_2246285728repUS731101 / 110192.10CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
IEPCNPLB_10.01.00.0
IEPCNPLB_20.01.00.0
IEPCNPLB_30.01.00.0
IEPCNPLB_40.01.00.0
IEPCNPLB_50.01.00.0
IEPCNPLB_60.01.00.0
IEPCNPLB_70.01.00.0
IEPCNPLB_80.01.00.0
IEPCNPLB_90.01.00.0
IEPCNPLB_101.00.01.0
IEPCNPLB_111.00.01.0
IEPCNPLB_120.01.00.0
IEPCNPLB_131.00.01.0
IEPCNPLB_141.00.01.0
IEPCNPLB_151.00.01.0
IEPCNPLB_161.00.01.0
IEPCNPLB_171.00.01.0
IEPCNPLB_181.00.01.0
IEPCNPLB_190.01.00.0
IEPCNPLB_201.00.01.0
IEPCNPLB_210.01.00.0
IEPCNPLB_221.00.01.0
IEPCNPLB_230.01.00.0
IEPCNPLB_241.00.01.0
IEPCNPLB_251.00.01.0
IEPCNPLB_261.00.01.0
IEPCNPLB_271.00.01.0
IEPCNPLB_281.00.01.0
IEPCNPLB_291.00.01.0
IEPCNPLB_301.00.01.0
IEPCNPLB_310.01.00.0
IEPCNPLB_321.00.01.0
IEPCNPLB_340.01.00.0
IEPCNPLB_351.00.01.0
IEPCNPLB_371.00.01.0
IEPCNPLB_381.00.01.0
IEPCNPLB_391.00.01.0
IEPCNPLB_401.00.01.0
IEPCNPLB_440.01.00.0
IEPCNPLB_450.01.00.0
IEPCNPLB_460.01.00.0
IEPCNPLB_470.01.00.0
IEPCNPLB_480.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
IEPCNPLB_176427101275FalseSiphoviridaeVOG1183, VOG5616, VOG0638, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8704, VOG8438, VOG6373, VOG4334, VOG4705, VOG4918
IEPCNPLB_3329722FalseSiphoviridaeVOG5088, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG8478, VOG4673, VOG3643, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925, VOG0181
IEPCNPLB_12243294281706FalseSiphoviridaeVOG6421, VOG4602, VOG6495, VOG6495, VOG0181, VOG0535, VOG0283, VOG0226, VOG4855, VOG0189, VOG4693, VOG0198, VOG0143, VOG1183, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637
IEPCNPLB_44161414172385FalseSiphoviridaeVOG8908, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements