Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PGPBBNNF_9 | 439872 | 439168 | WalR | 3.13e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PGPBBNNF_10 | 406263 | 406457 | CspR | 2.43e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PGPBBNNF_10 | 406263 | 406460 | CspA | 3.72e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGPBBNNF_1 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_2 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_3 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_5 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_7 | 1.0 | 0.0 | 1.0 |
| PGPBBNNF_9 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_10 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_11 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_12 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_13 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_14 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_15 | 0.0 | 1.0 | 0.0 |
| PGPBBNNF_16 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGPBBNNF_1 | 464509 | 495827 | False | Siphoviridae | VOG3443, VOG1191, VOG1521, VOG0054, VOG0753, VOG4615, VOG4783, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468, VOG4841, VOG0198 |
| PGPBBNNF_10 | 81091 | 112469 | False | Siphoviridae | VOG3549, VOG0650, VOG1309, VOG0186, VOG4855, VOG0189, VOG4693, VOG10015, VOG5883, VOG0044, VOG3643, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG1637 |
| PGPBBNNF_12 | 149630 | 160837 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)