Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHDDACFP_23 | 88696 | 89400 | WalR | 1.78e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CHDDACFP_35 | 57789 | 57983 | CspR | 4.59e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CHDDACFP_35 | 57789 | 57986 | CspA | 7.04e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHDDACFP_11 | 1218 | 2124 | rep38 | 907 / 903 | 99.01 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHDDACFP_1 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_2 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_3 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_4 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_5 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_6 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_7 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_8 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_9 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_10 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_11 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_12 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_13 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_14 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_15 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_16 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_17 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_18 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_19 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_20 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_21 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_22 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_23 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_24 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_25 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_26 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_28 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_29 | 1.0 | 0.0 | 1.0 |
| CHDDACFP_30 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_31 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_32 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_33 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_34 | 0.0 | 1.0 | 0.0 |
| CHDDACFP_35 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHDDACFP_1 | 409000 | 444420 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG5278, VOG10184, VOG4673, VOG0822, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| CHDDACFP_12 | 149452 | 172910 | False | Siphoviridae | VOG4841, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599, VOG10957 |
| CHDDACFP_31 | 116037 | 145850 | False | Siphoviridae | VOG0189, VOG0713, VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG1183 |
| CHDDACFP_31 | 153758 | 155138 | False | Unknown | VOG6495, VOG11003 |
Phigaro v2.4.0 (Database: Jan. 2024 release)