Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EJAIBMHD_1 | 457590 | 456886 | WalR | 4.23e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| EJAIBMHD_6 | 425448 | 425642 | CspR | 2.99e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EJAIBMHD_6 | 425448 | 425645 | CspA | 4.58e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EJAIBMHD_1 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_2 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_3 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_6 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_7 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_8 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_9 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_10 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_11 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_12 | 0.0 | 1.0 | 0.0 |
| EJAIBMHD_13 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EJAIBMHD_6 | 86375 | 122114 | False | Siphoviridae | VOG3549, VOG0650, VOG1309, VOG0186, VOG4566, VOG0189, VOG4693, VOG0044, VOG3643, VOG3307, VOG0102, VOG0198, VOG4214, VOG4571, VOG4571, VOG0045, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG8438, VOG0870, VOG0804, VOG4705, VOG5008, VOG8294, VOG1637 |
| EJAIBMHD_10 | 165733 | 203288 | False | Siphoviridae | VOG3443, VOG1191, VOG1521, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG5278, VOG6154, VOG5495, VOG0052, VOG3307, VOG0044, VOG1446, VOG8310, VOG0159, VOG0327, VOG4609, VOG4632, VOG6545, VOG2528, VOG0322, VOG4548, VOG0321, VOG11016, VOG8925, VOG0181, VOG8222 |
| EJAIBMHD_11 | 62233 | 85600 | False | Myoviridae | VOG0602, VOG9888, VOG8917, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG3636, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG8607 |
| EJAIBMHD_11 | 91229 | 98407 | False | Siphoviridae | VOG0226, VOG0283, VOG6888, VOG8109, VOG0650, VOG4552, VOG2338, VOG6495, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)