Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
MEOADPAA_347240373107WalR1.71e-114transcriptional regulatory protein84.25100.00EPH95667
MEOADPAA_1224855224661CspR2.42e-29cold shock protein84.6198.48AAO82613
MEOADPAA_1224855224658CspA3.71e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
MEOADPAA_141699917895rep38908 / 90396.81CP005943
MEOADPAA_1128093909repUS731101 / 110192.10CP002654
MEOADPAA_271221057rep28937 / 93681.54CP005948

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
MEOADPAA_10.01.00.0
MEOADPAA_20.01.00.0
MEOADPAA_30.01.00.0
MEOADPAA_40.01.00.0
MEOADPAA_50.01.00.0
MEOADPAA_60.01.00.0
MEOADPAA_70.01.00.0
MEOADPAA_81.00.01.0
MEOADPAA_90.01.00.0
MEOADPAA_100.01.00.0
MEOADPAA_111.00.01.0
MEOADPAA_120.01.00.0
MEOADPAA_131.00.01.0
MEOADPAA_141.00.01.0
MEOADPAA_150.01.00.0
MEOADPAA_161.00.01.0
MEOADPAA_171.00.01.0
MEOADPAA_181.00.01.0
MEOADPAA_190.01.00.0
MEOADPAA_200.01.00.0
MEOADPAA_211.00.01.0
MEOADPAA_221.00.01.0
MEOADPAA_230.01.00.0
MEOADPAA_241.00.01.0
MEOADPAA_251.00.01.0
MEOADPAA_261.00.01.0
MEOADPAA_271.00.01.0
MEOADPAA_281.00.01.0
MEOADPAA_291.00.01.0
MEOADPAA_301.00.01.0
MEOADPAA_311.00.01.0
MEOADPAA_321.00.01.0
MEOADPAA_331.00.01.0
MEOADPAA_340.01.00.0
MEOADPAA_361.00.01.0
MEOADPAA_371.00.01.0
MEOADPAA_381.00.01.0
MEOADPAA_391.00.01.0
MEOADPAA_401.00.01.0
MEOADPAA_421.00.01.0
MEOADPAA_431.00.01.0
MEOADPAA_440.01.00.0
MEOADPAA_450.01.00.0
MEOADPAA_461.00.01.0
MEOADPAA_471.00.01.0
MEOADPAA_481.00.01.0
MEOADPAA_491.00.01.0
MEOADPAA_501.00.01.0
MEOADPAA_530.01.00.0
MEOADPAA_540.01.00.0
MEOADPAA_550.01.00.0
MEOADPAA_560.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
MEOADPAA_1528627546897FalseSiphoviridaeVOG0753, VOG4615, VOG4705, VOG4334, VOG4612, VOG8438, VOG8704, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695
MEOADPAA_12241344279756FalseSiphoviridaeVOG6421, VOG4602, VOG6495, VOG6495, VOG0181, VOG0535, VOG0283, VOG0226, VOG4855, VOG0189, VOG4693, VOG0198, VOG0143, VOG1183, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637
MEOADPAA_5577202113258FalseSiphoviridaeVOG0535, VOG0322, VOG0514, VOG4566, VOG0189, VOG1298, VOG0822, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG3498, VOG9998, VOG4615, VOG0753, VOG0054

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements