Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KLAEAJJC_40 | 34734 | 35438 | WalR | 2.38e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KLAEAJJC_32 | 11664 | 11470 | CspR | 2.80e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KLAEAJJC_32 | 11664 | 11467 | CspA | 4.30e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KLAEAJJC_118 | 721 | 1674 | repUS64 | 954 / 954 | 99.37 | JN601038 |
| KLAEAJJC_65 | 2288 | 3322 | rep38 | 1045 / 1104 | 81.53 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KLAEAJJC_1 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_2 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_3 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_4 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_5 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_6 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_7 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_8 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_9 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_10 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_11 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_22 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_27 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_28 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_29 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_30 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_31 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_32 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_33 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_34 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_35 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_36 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_37 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_38 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_39 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_40 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_41 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_42 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_43 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_44 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_45 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_46 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_47 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_48 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_49 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_50 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_51 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_52 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_53 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_54 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_55 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_56 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_57 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_58 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_59 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_60 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_61 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_62 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_63 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_64 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_65 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_66 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_67 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_68 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_69 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_70 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_71 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_72 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_73 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_74 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_75 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_76 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_77 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_78 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_79 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_80 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_81 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_82 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_83 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_84 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_85 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_86 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_87 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_88 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_89 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_90 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_91 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_92 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_93 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_94 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_95 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_96 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_97 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_98 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_99 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_100 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_101 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_102 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_103 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_104 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_105 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_106 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_108 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_109 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_110 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_111 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_112 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_113 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_114 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_115 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_116 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_117 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_118 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_119 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_120 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_121 | 1.0 | 0.0 | 1.0 |
| KLAEAJJC_122 | 0.0 | 1.0 | 0.0 |
| KLAEAJJC_123 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KLAEAJJC_39 | 15312 | 19001 | False | Unknown | VOG9667, VOG3699, VOG4552, VOG4565, VOG7169 |
| KLAEAJJC_44 | 3279 | 36209 | False | Siphoviridae | VOG9667, VOG6139, VOG8615, VOG3549, VOG0650, VOG0535, VOG0283, VOG0226, VOG4566, VOG4552, VOG4693, VOG0044, VOG0198, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8438, VOG0870, VOG0804, VOG4705 |
| KLAEAJJC_57 | 54847 | 77051 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)