Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JINGBCCN_28 | 327261 | 326557 | WalR | 2.35e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JINGBCCN_19 | 77199 | 77005 | CspR | 5.04e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JINGBCCN_19 | 77199 | 77002 | CspA | 7.73e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JINGBCCN_36 | 17906 | 18575 | rep28 | 670 / 936 | 99.85 | CP005948 |
| JINGBCCN_45 | 12016 | 12734 | repUS73 | 719 / 1101 | 97.64 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JINGBCCN_11 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_19 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_20 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_21 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_22 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_23 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_24 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_25 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_26 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_27 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_28 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_29 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_30 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_31 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_32 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_33 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_34 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_35 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_36 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_37 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_38 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_39 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_40 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_41 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_42 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_43 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_44 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_45 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_46 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_47 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_48 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_49 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_50 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_51 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_52 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_53 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_54 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_55 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_56 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_57 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_58 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_59 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_60 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_61 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_62 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_63 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_64 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_65 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_66 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_67 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_68 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_69 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_70 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_71 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_72 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_73 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_74 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_75 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_76 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_78 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_79 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_81 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_82 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_83 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_84 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_85 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_86 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_87 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_88 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_89 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_90 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_91 | 1.0 | 0.0 | 1.0 |
| JINGBCCN_94 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_105 | 0.0 | 1.0 | 0.0 |
| JINGBCCN_116 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JINGBCCN_20 | 6316 | 18941 | False | Siphoviridae | VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG3643 |
| JINGBCCN_34 | 7773 | 18902 | False | Siphoviridae | VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044, VOG0586 |
| JINGBCCN_72 | 151264 | 171672 | False | Siphoviridae | VOG1637, VOG8294, VOG4856, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227 |
| JINGBCCN_116 | 5150 | 28440 | False | Siphoviridae | VOG0186, VOG1309, VOG0181, VOG6495, VOG6495, VOG4602, VOG7508, VOG7508, VOG0985, VOG1788, VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)