safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
3	0	0	3.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
NJCNKLAC_11	516810	517610	ErmF	ARO:3000498	ErmF	99.62	100.00	M17124.1
NJCNKLAC_11	515461	516597	tet(X)	ARO:3000205	tet(X)	99.74	97.42	M37699.1
NJCNKLAC_11	512798	514723	tet(Q)	ARO:3000191	tet(Q)	89.39	97.56	Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
NJCNKLAC_11	516810	517610	erm(F)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	M17808
NJCNKLAC_11	515431	516597	tet(X)	Doxycycline, Tetracycline, Minocycline, Tigecycline	99.91	100.00	M37699
NJCNKLAC_11	512798	514723	tet(Q)	Doxycycline, Tetracycline, Minocycline	90.61	99.95	L33696

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
NJCNKLAC_11	516813	517610	erm(F)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)	EXACTX	100.00	100.00	WP_002682030.1
NJCNKLAC_11	515431	516594	tet(X2)	tetracycline-inactivating monooxygenase Tet(X2)	BLASTX	99.74	100.00	WP_008651082.1
NJCNKLAC_11	512798	514720	tet(Q)	tetracycline resistance ribosomal protection protein Tet(Q)	BLASTX	89.86	100.00	WP_063856407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
NJCNKLAC_23	2015	2694	repUS2	682 / 681	98.53	BFU30316

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
NJCNKLAC_1	0.0	1.0	0.0
NJCNKLAC_2	0.0	1.0	0.0
NJCNKLAC_3	0.0	1.0	0.0
NJCNKLAC_4	0.0	1.0	0.0
NJCNKLAC_5	0.0	1.0	0.0
NJCNKLAC_6	0.0	1.0	0.0
NJCNKLAC_7	0.0	1.0	0.0
NJCNKLAC_8	0.0	1.0	0.0
NJCNKLAC_9	0.0	1.0	0.0
NJCNKLAC_10	0.0	1.0	0.0
NJCNKLAC_11	0.0	1.0	0.0
NJCNKLAC_12	0.0	1.0	0.0
NJCNKLAC_13	1.0	0.0	1.0
NJCNKLAC_14	0.0	1.0	0.0
NJCNKLAC_15	1.0	0.0	1.0
NJCNKLAC_16	1.0	0.0	1.0
NJCNKLAC_17	0.0	1.0	0.0
NJCNKLAC_18	0.0	1.0	0.0
NJCNKLAC_19	0.0	1.0	0.0
NJCNKLAC_20	1.0	0.0	1.0
NJCNKLAC_22	0.0	1.0	0.0
NJCNKLAC_23	1.0	0.0	1.0
NJCNKLAC_24	1.0	0.0	1.0
NJCNKLAC_25	1.0	0.0	1.0
NJCNKLAC_26	0.0	1.0	0.0
NJCNKLAC_27	1.0	0.0	1.0
NJCNKLAC_28	0.0	1.0	0.0
NJCNKLAC_29	1.0	0.0	1.0
NJCNKLAC_31	1.0	0.0	1.0
NJCNKLAC_32	1.0	0.0	1.0
NJCNKLAC_33	0.0	1.0	0.0
NJCNKLAC_44	0.0	1.0	0.0
NJCNKLAC_45	0.0	1.0	0.0
NJCNKLAC_46	0.0	1.0	0.0
NJCNKLAC_47	0.0	1.0	0.0
NJCNKLAC_48	0.0	1.0	0.0
NJCNKLAC_49	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)