Probiotic potential risk score


ARGs VFs PGs PPRS
2002.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
HPEKEBAI_15149648150784tet(X)ARO:3000205tet(X)99.7497.42M37699.1
HPEKEBAI_15148635149435ErmFARO:3000498ErmF99.62100.00M17124.1
HPEKEBAI_5131220tet(Q)ARO:3000191tet(Q)88.9261.80Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
HPEKEBAI_15148635149435erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S100.00100.00M17808
HPEKEBAI_15149648150814tet(X)Doxycycline, Tetracycline, Minocycline, Tigecycline99.91100.00M37699
HPEKEBAI_5111220tet(Q)Doxycycline, Tetracycline, Minocycline90.8363.29L33696

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
HPEKEBAI_15148635149432erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)EXACTX100.00100.00WP_002682030.1
HPEKEBAI_15149651150814tet(X2)tetracycline-inactivating monooxygenase Tet(X2)BLASTX99.74100.00WP_008651082.1
HPEKEBAI_5131220tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)PARTIAL_CONTIG_ENDX89.9063.34WP_063856407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HPEKEBAI_5420162695repUS2682 / 68198.53BFU30316

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HPEKEBAI_10.01.00.0
HPEKEBAI_21.00.01.0
HPEKEBAI_31.00.01.0
HPEKEBAI_40.01.00.0
HPEKEBAI_61.00.01.0
HPEKEBAI_70.01.00.0
HPEKEBAI_80.01.00.0
HPEKEBAI_91.00.01.0
HPEKEBAI_101.00.01.0
HPEKEBAI_110.01.00.0
HPEKEBAI_120.01.00.0
HPEKEBAI_130.01.00.0
HPEKEBAI_150.01.00.0
HPEKEBAI_170.01.00.0
HPEKEBAI_190.01.00.0
HPEKEBAI_220.01.00.0
HPEKEBAI_260.01.00.0
HPEKEBAI_270.01.00.0
HPEKEBAI_280.01.00.0
HPEKEBAI_320.01.00.0
HPEKEBAI_330.01.00.0
HPEKEBAI_340.01.00.0
HPEKEBAI_351.00.01.0
HPEKEBAI_360.01.00.0
HPEKEBAI_370.01.00.0
HPEKEBAI_380.01.00.0
HPEKEBAI_390.01.00.0
HPEKEBAI_400.01.00.0
HPEKEBAI_411.00.01.0
HPEKEBAI_420.01.00.0
HPEKEBAI_430.01.00.0
HPEKEBAI_440.01.00.0
HPEKEBAI_451.00.01.0
HPEKEBAI_461.00.01.0
HPEKEBAI_471.00.01.0
HPEKEBAI_480.01.00.0
HPEKEBAI_491.00.01.0
HPEKEBAI_500.01.00.0
HPEKEBAI_510.01.00.0
HPEKEBAI_530.01.00.0
HPEKEBAI_541.00.01.0
HPEKEBAI_560.01.00.0
HPEKEBAI_571.00.01.0
HPEKEBAI_581.00.01.0
HPEKEBAI_590.01.00.0
HPEKEBAI_601.00.01.0
HPEKEBAI_611.00.01.0
HPEKEBAI_620.01.00.0
HPEKEBAI_630.01.00.0
HPEKEBAI_640.01.00.0
HPEKEBAI_651.00.01.0
HPEKEBAI_660.01.00.0
HPEKEBAI_671.00.01.0
HPEKEBAI_680.01.00.0
HPEKEBAI_691.00.01.0
HPEKEBAI_700.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements