Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DOMEABDN_54 | 12532 | 13332 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| DOMEABDN_54 | 11183 | 12319 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| DOMEABDN_54 | 8520 | 10445 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DOMEABDN_54 | 12532 | 13332 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| DOMEABDN_54 | 11153 | 12319 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| DOMEABDN_54 | 8520 | 10445 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.61 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DOMEABDN_54 | 12535 | 13332 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| DOMEABDN_54 | 11153 | 12316 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| DOMEABDN_54 | 8520 | 10442 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DOMEABDN_63 | 2031 | 2710 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DOMEABDN_1 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_2 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_3 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_4 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_5 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_6 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_7 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_8 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_9 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_11 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_12 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_13 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_14 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_15 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_16 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_17 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_20 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_22 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_24 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_27 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_28 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_31 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_35 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_36 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_37 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_38 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_39 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_40 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_41 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_42 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_43 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_44 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_45 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_46 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_47 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_48 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_49 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_50 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_51 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_52 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_53 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_54 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_55 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_56 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_57 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_58 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_59 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_60 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_61 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_62 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_63 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_64 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_65 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_66 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_67 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_68 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_69 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_70 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_71 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_72 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_73 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_74 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_75 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_76 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_77 | 1.0 | 0.0 | 1.0 |
| DOMEABDN_78 | 0.0 | 1.0 | 0.0 |
| DOMEABDN_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DOMEABDN_51 | 24571 | 34176 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)