Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OFDGPBJK_1 | 54707 | 55411 | WalR | 1.85e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OFDGPBJK_1 | 0.0 | 1.0 | 0.0 |
| OFDGPBJK_2 | 1.0 | 0.0 | 1.0 |
| OFDGPBJK_3 | 1.0 | 0.0 | 1.0 |
| OFDGPBJK_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OFDGPBJK_1 | 45730 | 50169 | False | Unknown | VOG4841, VOG4581, VOG4544 |
| OFDGPBJK_1 | 588203 | 614841 | False | Siphoviridae | VOG0044, VOG0044, VOG3643, VOG1049, VOG0198, VOG1714, VOG1183, VOG0638, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG1637, VOG4626, VOG4334, VOG7896, VOG4783, VOG8294, VOG1637 |
| OFDGPBJK_1 | 1058829 | 1086382 | False | Siphoviridae | VOG0322, VOG0514, VOG4799, VOG0189, VOG6005, VOG10015, VOG1551, VOG5883, VOG0044, VOG0044, VOG3643, VOG0198, VOG1315, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605 |
| OFDGPBJK_1 | 2180296 | 2207808 | False | Siphoviridae | VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796 |
| OFDGPBJK_1 | 2209749 | 2211876 | False | Unknown | VOG4566, VOG0186 |
| OFDGPBJK_1 | 2212630 | 2214056 | False | Siphoviridae | VOG7298, VOG0181 |
| OFDGPBJK_1 | 2243820 | 2275262 | False | Siphoviridae | VOG8868, VOG7896, VOG4334, VOG4626, VOG4904, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG1315, VOG0198, VOG9671, VOG0044, VOG6970, VOG1297, VOG3468, VOG3480, VOG0327, VOG0189, VOG5046, VOG0535, VOG2703, VOG3549 |
Phigaro v2.4.0 (Database: Jan. 2024 release)