Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDKEOOEH_49 | 128734 | 129438 | WalR | 1.70e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JDKEOOEH_1 | 356081 | 356275 | CspR | 2.21e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JDKEOOEH_1 | 356081 | 356278 | CspA | 3.39e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDKEOOEH_1 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_7 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_8 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_9 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_10 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_11 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_12 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_13 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_14 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_15 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_16 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_17 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_18 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_19 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_20 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_21 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_22 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_23 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_24 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_25 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_26 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_27 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_28 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_29 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_30 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_31 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_32 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_33 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_35 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_36 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_37 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_38 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_39 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_41 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_42 | 1.0 | 0.0 | 1.0 |
| JDKEOOEH_49 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_58 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_67 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_77 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_88 | 0.0 | 1.0 | 0.0 |
| JDKEOOEH_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDKEOOEH_1 | 4393 | 27651 | False | Siphoviridae | VOG2602, VOG6179, VOG0198, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| JDKEOOEH_67 | 145749 | 178317 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298 |
| JDKEOOEH_67 | 178524 | 179241 | False | Unknown | VOG6495 |
| JDKEOOEH_67 | 180071 | 180858 | False | Unknown | VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)