Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCJDDPBG_49 | 79132 | 78428 | WalR | 8.36e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PCJDDPBG_9 | 65934 | 66128 | CspR | 3.34e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PCJDDPBG_9 | 65934 | 66131 | CspA | 5.12e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PCJDDPBG_54 | 7976 | 8805 | rep28 | 830 / 936 | 100.00 | CP005948 |
| PCJDDPBG_33 | 19376 | 20415 | rep38 | 1042 / 1104 | 88.48 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCJDDPBG_6 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_7 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_8 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_9 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_10 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_11 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_12 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_13 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_14 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_15 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_16 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_17 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_18 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_19 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_20 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_21 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_22 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_23 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_24 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_25 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_26 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_27 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_28 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_29 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_30 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_31 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_32 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_33 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_34 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_35 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_36 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_37 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_38 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_39 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_40 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_41 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_42 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_43 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_44 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_45 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_46 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_47 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_48 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_49 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_50 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_51 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_52 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_53 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_54 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_55 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_56 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_57 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_58 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_59 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_60 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_61 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_62 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_63 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_64 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_65 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_66 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_67 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_68 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_69 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_70 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_71 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_72 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_73 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_74 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_75 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_76 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_77 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_79 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_80 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_81 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_82 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_83 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_85 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_86 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_87 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_88 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_89 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_90 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_91 | 1.0 | 0.0 | 1.0 |
| PCJDDPBG_93 | 0.0 | 1.0 | 0.0 |
| PCJDDPBG_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCJDDPBG_14 | 3146 | 6800 | False | Siphoviridae | VOG0650, VOG3711, VOG4552, VOG8520, VOG8520, VOG4602 |
| PCJDDPBG_71 | 81690 | 114439 | False | Siphoviridae | VOG6495, VOG6495, VOG0181, VOG0052, VOG2703, VOG0535, VOG4855, VOG4693, VOG0586, VOG0044, VOG0198, VOG1183, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG5008, VOG0703, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)