Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NAFNPDAC_43 | 83562 | 84266 | WalR | 1.18e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NAFNPDAC_98 | 112993 | 112796 | CspR | 1.81e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NAFNPDAC_25 | 34309 | 35370 | repUS74 | 1063 / 1062 | 92.10 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NAFNPDAC_11 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_12 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_13 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_14 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_15 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_16 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_17 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_18 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_19 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_20 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_21 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_22 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_23 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_24 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_25 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_26 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_27 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_28 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_29 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_30 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_31 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_32 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_33 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_34 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_35 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_36 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_37 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_38 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_39 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_40 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_41 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_42 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_43 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_44 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_45 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_46 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_47 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_48 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_49 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_50 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_51 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_52 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_53 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_54 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_55 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_56 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_57 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_58 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_59 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_60 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_61 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_63 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_64 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_65 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_66 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_67 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_68 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_69 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_70 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_71 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_72 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_73 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_74 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_75 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_76 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_77 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_78 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_79 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_80 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_81 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_82 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_83 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_84 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_85 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_86 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_87 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_88 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_89 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_90 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_91 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_92 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_93 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_94 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_95 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_96 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_97 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_98 | 0.0 | 1.0 | 0.0 |
| NAFNPDAC_99 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_100 | 1.0 | 0.0 | 1.0 |
| NAFNPDAC_109 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NAFNPDAC_28 | 6037 | 10567 | False | Siphoviridae | VOG4799, VOG0189, VOG0982, VOG5280 |
| NAFNPDAC_65 | 88644 | 118947 | False | Siphoviridae | VOG4649, VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG5699, VOG9153, VOG0198, VOG1563, VOG1298, VOG1298, VOG0982, VOG0189, VOG4799, VOG4552, VOG5353 |
| NAFNPDAC_76 | 72407 | 78955 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)