Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMBCPCPH_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMBCPCPH_1 | 3071 | 17895 | True | Myoviridae | VOG0083, VOG0382, VOG0384, VOG1026, VOG1026, VOG4357, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| GMBCPCPH_1 | 631979 | 705276 | False | Siphoviridae | VOG7424, VOG0248, VOG6823, VOG4552, VOG1309, VOG0186, VOG0226, VOG4566, VOG0189, VOG8685, VOG1298, VOG4693, VOG4559, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG0801, VOG4760, VOG10972, VOG9997, VOG2037, VOG4856, VOG10223, VOG1637, VOG0703, VOG4615, VOG4116, VOG3303, VOG0221, VOG7424, VOG0248, VOG6823, VOG4552, VOG1309, VOG0186, VOG0226, VOG4566, VOG0189, VOG8685, VOG1298, VOG4693, VOG4559, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG0801, VOG4760, VOG10972, VOG9997, VOG2037, VOG4856, VOG10223, VOG1637 |
| GMBCPCPH_1 | 777388 | 802746 | True | Siphoviridae | VOG1279, VOG0198, VOG8353, VOG4999, VOG4632, VOG0650, VOG9667, VOG0275, VOG5088, VOG1355, VOG4624, VOG4357, VOG1026, VOG1292, VOG9967 |
| GMBCPCPH_1 | 847511 | 880850 | False | Siphoviridae | VOG0819, VOG0862, VOG7298, VOG9667, VOG0650, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG4657, VOG0198, VOG7312, VOG10227, VOG0720, VOG4564, VOG1300, VOG10914, VOG1319, VOG4713, VOG5660, VOG0724, VOG0799, VOG0725, VOG4545, VOG0727, VOG4599, VOG0648, VOG0641, VOG8294 |
| GMBCPCPH_1 | 1711404 | 1753025 | True | Siphoviridae | VOG1026, VOG4357, VOG4548, VOG4617, VOG4571, VOG11077, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG5413 |
Phigaro v2.4.0 (Database: Jan. 2024 release)