Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GPJOEOKK_35 | 82361 | 82164 | CspA | 2.56e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| GPJOEOKK_35 | 82361 | 82167 | CspR | 1.11e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPJOEOKK_11 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_15 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_16 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_17 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_18 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_19 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_20 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_21 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_22 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_23 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_24 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_25 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_26 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_27 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_28 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_29 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_30 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_31 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_32 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_33 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_34 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_35 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_36 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_37 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_38 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_39 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_40 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_41 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_42 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_43 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_44 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_45 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_46 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_47 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_48 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_49 | 1.0 | 0.0 | 1.0 |
| GPJOEOKK_50 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_51 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_52 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_53 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_54 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_55 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_56 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_57 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_58 | 1.0 | 0.0 | 1.0 |
| GPJOEOKK_59 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_60 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_61 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_62 | 1.0 | 0.0 | 1.0 |
| GPJOEOKK_63 | 1.0 | 0.0 | 1.0 |
| GPJOEOKK_64 | 1.0 | 0.0 | 1.0 |
| GPJOEOKK_68 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_79 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_90 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_101 | 0.0 | 1.0 | 0.0 |
| GPJOEOKK_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPJOEOKK_17 | 9480 | 25880 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
Phigaro v2.4.0 (Database: Jan. 2024 release)