Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMOCAHFI_57 | 252 | 1043 | aadA | ARO:3002601 | aadA | 100.00 | 114.45 | AF550679.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMOCAHFI_57 | 252 | 1043 | aadA1 | Spectinomycin, Streptomycin | 99.75 | 100.00 | JQ414041 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMOCAHFI_57 | 255 | 1043 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | EXACTX | 100.00 | 100.00 | WP_001206316.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMOCAHFI_57 | 1192 | 1302 | int | 1.71e-18 | integrase | 100.00 | 100.00 | CAB40914 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMOCAHFI_61 | 691 | 804 | Col440I | 114 / 114 | 94.74 | CP023920.1 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMOCAHFI_1 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_2 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_3 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_4 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_5 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_6 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_7 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_8 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_9 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_10 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_11 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_12 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_13 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_14 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_15 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_16 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_17 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_18 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_19 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_21 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_22 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_23 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_24 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_25 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_26 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_27 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_28 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_29 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_30 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_31 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_32 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_33 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_34 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_35 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_36 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_38 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_39 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_40 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_41 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_42 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_43 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_44 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_45 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_47 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_48 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_49 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_50 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_51 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_52 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_53 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_54 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_55 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_56 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_57 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_58 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_59 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_60 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_61 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_62 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_63 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_64 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_65 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_66 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_67 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_68 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_69 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_70 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_71 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_72 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_73 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_74 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_75 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_76 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_77 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_78 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_79 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_80 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_81 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_82 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_83 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_84 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_85 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_86 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_87 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_88 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_90 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_98 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_108 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_109 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_120 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_131 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_142 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_153 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_164 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_173 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_184 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_194 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_205 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_214 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_215 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_225 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_236 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_247 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_258 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_269 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_280 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_291 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_302 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_313 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_318 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_319 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_320 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_321 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_322 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_323 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_324 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_325 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_326 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_327 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_328 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_329 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_330 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_331 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_332 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_333 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_334 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_335 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_336 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_337 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_338 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_339 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_340 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_341 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_342 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_343 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_344 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_345 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_346 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_347 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_348 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_349 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_350 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_351 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_352 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_353 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_354 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_355 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_356 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_357 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_358 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_359 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_360 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_361 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_362 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_363 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_364 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_365 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_366 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_367 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_368 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_369 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_370 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_371 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_372 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_373 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_374 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_375 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_376 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_377 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_378 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_379 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_380 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_381 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_382 | 1.0 | 0.0 | 1.0 |
| CMOCAHFI_383 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_384 | 0.0 | 1.0 | 0.0 |
| CMOCAHFI_385 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMOCAHFI_109 | 61849 | 91385 | False | Myoviridae | VOG0376, VOG2545, VOG0796, VOG7407, VOG1912, VOG5027, VOG4918, VOG1915, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG5334, VOG2170, VOG9945, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)