Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KJPCCOMN_1 | 39541 | 40245 | WalR | 1.78e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KJPCCOMN_9 | 2329 | 3264 | rep28 | 937 / 936 | 96.58 | CP005948 |
| KJPCCOMN_5 | 18947 | 19604 | rep38 | 663 / 903 | 84.31 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KJPCCOMN_1 | 0.0 | 1.0 | 0.0 |
| KJPCCOMN_2 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_3 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_4 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_5 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_6 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_7 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_8 | 1.0 | 0.0 | 1.0 |
| KJPCCOMN_9 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KJPCCOMN_1 | 565513 | 598389 | False | Siphoviridae | VOG8426, VOG3549, VOG0650, VOG1309, VOG0186, VOG0189, VOG4693, VOG1298, VOG10015, VOG0044, VOG0198, VOG1183, VOG0796, VOG4544, VOG10904, VOG10227, VOG0691, VOG0692, VOG5047, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9531, VOG5008 |
| KJPCCOMN_1 | 829239 | 831638 | False | Unknown | VOG9312, VOG9312 |
| KJPCCOMN_1 | 2104326 | 2114263 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG5088, VOG4841, VOG0205 |
| KJPCCOMN_1 | 2750640 | 2773201 | True | Unknown | VOG5088, VOG0275, VOG2154, VOG5944, VOG2154, VOG5944, VOG2154, VOG0275, VOG5088, VOG0944, VOG0822, VOG5532, VOG3624 |
Phigaro v2.4.0 (Database: Jan. 2024 release)