Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCDLOMIK_1 | 1711241 | 1710537 | WalR | 2.91e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| OCDLOMIK_6 | 754031 | 753834 | CspR | 4.56e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OCDLOMIK_8 | 24025 | 25083 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCDLOMIK_1 | 0.0 | 1.0 | 0.0 |
| OCDLOMIK_2 | 1.0 | 0.0 | 1.0 |
| OCDLOMIK_4 | 1.0 | 0.0 | 1.0 |
| OCDLOMIK_5 | 1.0 | 0.0 | 1.0 |
| OCDLOMIK_6 | 0.0 | 1.0 | 0.0 |
| OCDLOMIK_7 | 0.0 | 1.0 | 0.0 |
| OCDLOMIK_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCDLOMIK_1 | 593562 | 638358 | False | Siphoviridae | VOG4632, VOG4609, VOG0275, VOG9860, VOG0002, VOG10933, VOG2215, VOG4995, VOG4552, VOG0181, VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9667, VOG9860, VOG6623, VOG4693, VOG9741, VOG0152, VOG3643, VOG9281, VOG0198, VOG4570, VOG10904, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG1637, VOG0054, VOG4918 |
| OCDLOMIK_1 | 744667 | 764373 | False | Myoviridae / Siphoviridae | VOG4609, VOG4609, VOG4581, VOG1886, VOG5051, VOG4556, VOG4568, VOG0204, VOG4556, VOG4568, VOG0204, VOG4589, VOG4594, VOG3801, VOG4548 |
Phigaro v2.4.0 (Database: Jan. 2024 release)