Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BOMFPFLB_2 | 123936 | 124640 | WalR | 1.80e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| BOMFPFLB_17 | 22513 | 22710 | CspR | 7.48e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BOMFPFLB_1 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_2 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_3 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_4 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_5 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_6 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_7 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_8 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_9 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_10 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_11 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_12 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_13 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_14 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_15 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_16 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_17 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_18 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_19 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_20 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_21 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_22 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_23 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_24 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_25 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_26 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_27 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_28 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_29 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_30 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_31 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_32 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_33 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_34 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_35 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_36 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_37 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_38 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_39 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_40 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_42 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_43 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_44 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_45 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_46 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_47 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_48 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_49 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_50 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_53 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_54 | 1.0 | 0.0 | 1.0 |
| BOMFPFLB_55 | 0.0 | 1.0 | 0.0 |
| BOMFPFLB_56 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BOMFPFLB_7 | 97044 | 109397 | False | Siphoviridae | VOG3424, VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632 |
| BOMFPFLB_17 | 45098 | 50635 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003 |
| BOMFPFLB_19 | 836 | 23960 | False | Siphoviridae | VOG6947, VOG4841, VOG4581, VOG1886, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG4705, VOG1637, VOG0703 |
| BOMFPFLB_22 | 4619 | 26151 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG7896, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG5616, VOG1345, VOG4564, VOG0720, VOG4544 |
Phigaro v2.4.0 (Database: Jan. 2024 release)