Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 2 | 2 | 2.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IBOCPDNH_9 | 3464 | 4432 | STR_RS05220 | 0.0 | Capsule | Immune modulation | 94.76 | 99.28 | WP_011227240 |
| IBOCPDNH_9 | 1292 | 2360 | STR_RS05215 | 0.0 | Capsule | Immune modulation | 94.20 | 98.61 | WP_011227239 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IBOCPDNH_65 | 77207 | 77911 | WalR | 1.74e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IBOCPDNH_64 | 5365 | 5559 | CspR | 3.57e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IBOCPDNH_64 | 5365 | 5562 | CspA | 5.48e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IBOCPDNH_69 | 7800 | 8736 | rep28 | 937 / 936 | 99.89 | CP005948 |
| IBOCPDNH_62 | 241 | 1197 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IBOCPDNH_1 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_2 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_3 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_4 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_5 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_6 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_8 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_9 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_10 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_11 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_12 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_13 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_14 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_15 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_16 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_17 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_18 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_19 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_20 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_22 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_23 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_24 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_25 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_26 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_27 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_28 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_29 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_30 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_31 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_32 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_33 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_34 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_35 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_36 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_37 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_38 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_39 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_40 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_41 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_42 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_44 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_45 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_46 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_47 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_48 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_49 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_50 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_51 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_53 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_56 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_58 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_59 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_60 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_61 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_62 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_63 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_64 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_65 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_66 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_67 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_68 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_69 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_70 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_71 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_72 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_74 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_75 | 1.0 | 0.0 | 1.0 |
| IBOCPDNH_76 | 0.0 | 1.0 | 0.0 |
| IBOCPDNH_77 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IBOCPDNH_1 | 48707 | 49427 | False | Unknown | VOG2154 |
| IBOCPDNH_8 | 37461 | 53755 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG0275, VOG1012, VOG8491 |
| IBOCPDNH_8 | 65697 | 87496 | False | Siphoviridae | VOG0686, VOG0198, VOG0691, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8438, VOG0870, VOG0804 |
| IBOCPDNH_76 | 22231 | 54692 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG0044, VOG4571, VOG4693, VOG0189, VOG8647, VOG0514, VOG6545, VOG0322, VOG0685, VOG0650 |
Phigaro v2.4.0 (Database: Jan. 2024 release)