Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OENCILCI_1 | 2795425 | 2797350 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| OENCILCI_1 | 1765823 | 1766713 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OENCILCI_1 | 2795425 | 2797350 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OENCILCI_1 | 1765823 | 1766710 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| OENCILCI_1 | 2795425 | 2797347 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OENCILCI_9 | 341 | 1020 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OENCILCI_1 | 0.0 | 1.0 | 0.0 |
| OENCILCI_2 | 1.0 | 0.0 | 1.0 |
| OENCILCI_3 | 1.0 | 0.0 | 1.0 |
| OENCILCI_4 | 1.0 | 0.0 | 1.0 |
| OENCILCI_5 | 1.0 | 0.0 | 1.0 |
| OENCILCI_6 | 1.0 | 0.0 | 1.0 |
| OENCILCI_7 | 1.0 | 0.0 | 1.0 |
| OENCILCI_8 | 1.0 | 0.0 | 1.0 |
| OENCILCI_9 | 1.0 | 0.0 | 1.0 |
| OENCILCI_10 | 1.0 | 0.0 | 1.0 |
| OENCILCI_11 | 1.0 | 0.0 | 1.0 |
| OENCILCI_12 | 1.0 | 0.0 | 1.0 |
| OENCILCI_13 | 1.0 | 0.0 | 1.0 |
| OENCILCI_14 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OENCILCI_1 | 148498 | 160728 | False | Siphoviridae | VOG4690, |
| OENCILCI_1 | 1583106 | 1589964 | False | Unknown | VOG0226, |
| OENCILCI_1 | 2192670 | 2203381 | False | Unknown | VOG5821, |
| OENCILCI_1 | 3834571 | 3846266 | False | Unknown | VOG4572, |
| OENCILCI_1 | 4783231 | 4798059 | False | Siphoviridae | VOG0322, |
Phigaro v2.4.0 (Database: Jan. 2024 release)