Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIOLMLDC_1 | 1926235 | 1926972 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| PIOLMLDC_1 | 703252 | 705171 | tet(O/W/32/O) | ARO:3007122 | tet(O/W/32/O) | 99.53 | 100.00 | DQ525023.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PIOLMLDC_1 | 703252 | 705171 | tet(O/W/32/O/W/O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | DQ525023 |
| PIOLMLDC_1 | 1926235 | 1926972 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.46 | 100.00 | JN899585 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIOLMLDC_1 | 703258 | 705171 | tet(O/W/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) | BLASTX | 99.53 | 99.84 | WP_063856419.1 |
| PIOLMLDC_1 | 1926235 | 1926969 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 98.79 | WP_063844850.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PIOLMLDC_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PIOLMLDC_1 | 765795 | 802449 | False | Siphoviridae | VOG7017, VOG0861, VOG0648, VOG5007, VOG10608, VOG1335, VOG1334, VOG1333, VOG4634, VOG0704, VOG1353, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG0720, VOG4544, VOG0796, VOG1345, VOG0198, VOG5160, VOG0634, VOG4693, VOG1298, VOG4732, VOG0635, VOG6414, VOG0195, VOG0275, VOG6495, VOG0189, VOG4566, VOG0906, VOG0321, VOG2766 |
Phigaro v2.4.0 (Database: Jan. 2024 release)