Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 0 | 0 | 11.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOCEKKLG_1 | 567810 | 569729 | tet(O) | ARO:3000190 | tet(O) | 99.37 | 100.00 | M18896.2 |
| HOCEKKLG_16 | 98987 | 101125 | vanT gene in vanG cluster | ARO:3002972 | vanT_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
| HOCEKKLG_16 | 98230 | 98994 | vanXY gene in vanG cluster | ARO:3003069 | vanXY_in_vanG | 100.00 | 100.00 | DQ212986.1 |
| HOCEKKLG_16 | 97184 | 98233 | vanG | ARO:3002909 | vanG | 100.00 | 100.00 | DQ212986.1 |
| HOCEKKLG_16 | 96346 | 97182 | vanW gene in vanG cluster | ARO:3002965 | vanW_in_vanG_cl | 99.64 | 98.93 | DQ212986.1 |
| HOCEKKLG_16 | 95422 | 96261 | vanY gene in vanG cluster | ARO:3002959 | vanY_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
| HOCEKKLG_16 | 94179 | 95285 | vanS gene in vanG cluster | ARO:3002937 | vanS_in_vanG_cl | 100.00 | 102.17 | DQ212986.1 |
| HOCEKKLG_16 | 93458 | 94165 | vanR gene in vanG cluster | ARO:3002926 | vanR_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
| HOCEKKLG_16 | 93229 | 93456 | vanU gene in vanG cluster | ARO:3004253 | vanU_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HOCEKKLG_16 | 97184 | 98994 | VanGXY | Vancomycin | 100.00 | 100.00 | AY271782 |
| HOCEKKLG_80 | 1374 | 2017 | ant(6)-Ia | Streptomycin | 100.00 | 74.28 | KF864551 |
| HOCEKKLG_1 | 567810 | 569729 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOCEKKLG_16 | 97184 | 98230 | vanG | D-alanine--D-serine ligase VanG | EXACTX | 100.00 | 100.00 | WP_021418924.1 |
| HOCEKKLG_16 | 93458 | 94162 | vanR-G | vancomycin resistance response regulator transcription factor VanR-G | EXACTX | 100.00 | 100.00 | WP_021418928.1 |
| HOCEKKLG_16 | 94179 | 95282 | vanS-G | vancomycin resistance histidine kinase VanS-G | EXACTX | 100.00 | 100.00 | WP_021418927.1 |
| HOCEKKLG_16 | 98987 | 101122 | vanT-G | membrane-bound serine racemase VanT-G | EXACTX | 100.00 | 100.00 | WP_021418922.1 |
| HOCEKKLG_16 | 93229 | 93453 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | EXACTX | 100.00 | 100.00 | WP_021418929.1 |
| HOCEKKLG_16 | 96337 | 97179 | vanW-G | glycopeptide resistance accessory protein VanW-G | EXACTX | 100.00 | 100.00 | WP_021419095.1 |
| HOCEKKLG_16 | 98230 | 98991 | vanXY | D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G | EXACTX | 100.00 | 100.00 | WP_063856782.1 |
| HOCEKKLG_16 | 95422 | 96258 | vanY-G1 | D-Ala-D-Ala carboxypeptidase VanY-G1 | EXACTX | 100.00 | 100.00 | WP_021418926.1 |
| HOCEKKLG_1 | 567813 | 569729 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.84 | 100.00 | WP_012669445.1 |
| HOCEKKLG_80 | 1373 | 2014 | aadE | aminoglycoside 6-adenylyltransferase AadE | PARTIALX | 99.53 | 74.31 | WP_001255868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOCEKKLG_1 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_2 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_3 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_4 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_5 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_6 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_7 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_8 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_9 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_10 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_11 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_12 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_13 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_14 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_15 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_16 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_17 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_18 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_19 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_20 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_21 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_22 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_23 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_24 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_25 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_26 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_27 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_28 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_29 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_30 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_31 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_32 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_33 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_34 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_35 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_36 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_37 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_38 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_39 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_40 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_41 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_42 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_43 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_44 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_45 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_46 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_47 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_48 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_49 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_50 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_51 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_52 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_53 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_54 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_55 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_56 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_57 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_58 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_59 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_60 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_61 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_62 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_63 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_64 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_65 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_66 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_67 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_68 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_69 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_70 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_71 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_72 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_73 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_74 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_75 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_76 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_77 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_78 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_79 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_80 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_81 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_82 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_83 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_84 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_85 | 0.0 | 1.0 | 0.0 |
| HOCEKKLG_86 | 1.0 | 0.0 | 1.0 |
| HOCEKKLG_87 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOCEKKLG_1 | 584304 | 595388 | True | Unknown | VOG7112, |
| HOCEKKLG_5 | 51931 | 68214 | False | Siphoviridae | VOG4659, |
| HOCEKKLG_16 | 121216 | 144219 | True | Siphoviridae | VOG9418, |
Phigaro v2.4.0 (Database: Jan. 2024 release)