Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 0 | 1 | 12.04 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPBPBBMI_12 | 53186 | 55324 | vanT gene in vanG cluster | ARO:3002972 | vanT_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
| IPBPBBMI_12 | 52429 | 53193 | vanXY gene in vanG cluster | ARO:3003069 | vanXY_in_vanG | 100.00 | 100.00 | DQ212986.1 |
| IPBPBBMI_12 | 51383 | 52432 | vanG | ARO:3002909 | vanG | 100.00 | 100.00 | DQ212986.1 |
| IPBPBBMI_12 | 50545 | 51381 | vanW gene in vanG cluster | ARO:3002965 | vanW_in_vanG_cl | 99.64 | 98.93 | DQ212986.1 |
| IPBPBBMI_12 | 49621 | 50460 | vanY gene in vanG cluster | ARO:3002959 | vanY_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
| IPBPBBMI_12 | 48378 | 49484 | vanS gene in vanG cluster | ARO:3002937 | vanS_in_vanG_cl | 100.00 | 102.17 | DQ212986.1 |
| IPBPBBMI_12 | 47657 | 48364 | vanR gene in vanG cluster | ARO:3002926 | vanR_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
| IPBPBBMI_12 | 47428 | 47655 | vanU gene in vanG cluster | ARO:3004253 | vanU_in_vanG_cl | 100.00 | 100.00 | DQ212986.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPBPBBMI_87 | 2028 | 2894 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| IPBPBBMI_12 | 51383 | 53193 | VanGXY | Vancomycin | 100.00 | 100.00 | AY271782 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPBPBBMI_87 | 2028 | 2891 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| IPBPBBMI_12 | 51383 | 52429 | vanG | D-alanine--D-serine ligase VanG | EXACTX | 100.00 | 100.00 | WP_021418924.1 |
| IPBPBBMI_12 | 47657 | 48361 | vanR-G | vancomycin resistance response regulator transcription factor VanR-G | EXACTX | 100.00 | 100.00 | WP_021418928.1 |
| IPBPBBMI_12 | 48378 | 49481 | vanS-G | vancomycin resistance histidine kinase VanS-G | EXACTX | 100.00 | 100.00 | WP_021418927.1 |
| IPBPBBMI_12 | 53186 | 55321 | vanT-G | membrane-bound serine racemase VanT-G | EXACTX | 100.00 | 100.00 | WP_021418922.1 |
| IPBPBBMI_12 | 47428 | 47652 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | EXACTX | 100.00 | 100.00 | WP_021418929.1 |
| IPBPBBMI_12 | 50536 | 51378 | vanW-G | glycopeptide resistance accessory protein VanW-G | EXACTX | 100.00 | 100.00 | WP_021419095.1 |
| IPBPBBMI_12 | 52429 | 53190 | vanXY | D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G | EXACTX | 100.00 | 100.00 | WP_063856782.1 |
| IPBPBBMI_12 | 49621 | 50457 | vanY-G1 | D-Ala-D-Ala carboxypeptidase VanY-G1 | EXACTX | 100.00 | 100.00 | WP_021418926.1 |
| IPBPBBMI_101 | 488 | 1183 | vanR-D | vancomycin resistance response regulator transcription factor VanR-D | BLASTX | 82.33 | 99.57 | WP_063856722.1 |
| IPBPBBMI_101 | 1200 | 1400 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IPBPBBMI_155 | 1124 | 495 | Rex | 4.08e-137 | global redox-sensing regulator | 100.00 | 100.00 | CAJ66992 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IPBPBBMI_116 | 1342 | 1964 | repA | 624 / 693 | 84.46 | JX397875 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IPBPBBMI_1 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_2 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_3 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_4 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_5 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_6 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_7 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_8 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_9 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_10 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_11 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_12 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_13 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_14 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_15 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_16 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_17 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_18 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_19 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_20 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_21 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_22 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_23 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_24 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_25 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_26 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_27 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_28 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_29 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_30 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_31 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_32 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_33 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_34 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_35 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_36 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_37 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_38 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_39 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_40 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_41 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_42 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_43 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_44 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_45 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_46 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_47 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_48 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_49 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_50 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_51 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_52 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_53 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_54 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_55 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_56 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_57 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_58 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_59 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_60 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_61 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_62 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_63 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_64 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_65 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_66 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_67 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_68 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_69 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_70 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_71 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_72 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_73 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_74 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_75 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_76 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_77 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_78 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_79 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_80 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_81 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_82 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_83 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_84 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_85 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_86 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_87 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_88 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_89 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_90 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_91 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_92 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_93 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_94 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_95 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_96 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_97 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_98 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_99 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_100 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_101 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_103 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_104 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_105 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_106 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_107 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_108 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_109 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_110 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_111 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_112 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_113 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_114 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_115 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_116 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_117 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_118 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_119 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_120 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_121 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_122 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_123 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_124 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_125 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_126 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_127 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_128 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_129 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_130 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_131 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_132 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_133 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_134 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_135 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_136 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_137 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_138 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_139 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_140 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_141 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_142 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_143 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_144 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_145 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_146 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_147 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_148 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_149 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_150 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_151 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_152 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_153 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_154 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_155 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_156 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_157 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_158 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_159 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_160 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_161 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_162 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_163 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_164 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_165 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_166 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_167 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_168 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_169 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_170 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_171 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_172 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_173 | 1.0 | 0.0 | 1.0 |
| IPBPBBMI_174 | 0.0 | 1.0 | 0.0 |
| IPBPBBMI_175 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IPBPBBMI_4 | 35567 | 51850 | False | Siphoviridae | VOG4659, |
| IPBPBBMI_12 | 75415 | 101627 | True | Siphoviridae | VOG9418, |
| IPBPBBMI_35 | 32991 | 44075 | True | Unknown | VOG2123, |
Phigaro v2.4.0 (Database: Jan. 2024 release)