Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMMLBCJL_14 | 114020 | 114922 | CepA-29 | ARO:3006224 | CepA-29 | 99.67 | 100.00 | NG_050385.1 |
| JMMLBCJL_14 | 91766 | 92971 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| JMMLBCJL_54 | 6451 | 8376 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| JMMLBCJL_99 | 181 | 1416 | tet(Q) | ARO:3000191 | tet(Q) | 94.42 | 62.71 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JMMLBCJL_14 | 114020 | 114922 | cepA-29 | Unknown Beta-lactam | 99.78 | 100.00 | U05884 |
| JMMLBCJL_99 | 229 | 1417 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.81 | 60.49 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMMLBCJL_14 | 91232 | 91741 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JMMLBCJL_14 | 114020 | 114919 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_063865204.1 |
| JMMLBCJL_14 | 91769 | 92971 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| JMMLBCJL_54 | 6454 | 8376 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
| JMMLBCJL_99 | 229 | 1416 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.47 | 60.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JMMLBCJL_20 | 67914 | 69107 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| JMMLBCJL_20 | 67914 | 69107 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| JMMLBCJL_20 | 67914 | 69107 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JMMLBCJL_1 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_2 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_3 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_4 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_5 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_6 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_7 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_8 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_9 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_10 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_11 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_12 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_13 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_14 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_15 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_16 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_17 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_18 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_19 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_20 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_21 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_22 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_23 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_24 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_25 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_26 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_27 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_28 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_29 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_30 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_31 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_32 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_33 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_34 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_35 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_36 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_37 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_38 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_39 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_40 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_41 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_42 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_43 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_44 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_45 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_46 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_47 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_48 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_49 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_50 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_51 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_52 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_53 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_54 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_55 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_56 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_57 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_58 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_59 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_60 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_61 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_62 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_63 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_64 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_65 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_66 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_67 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_68 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_69 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_70 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_71 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_72 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_73 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_74 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_75 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_76 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_77 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_78 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_79 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_80 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_81 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_82 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_83 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_84 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_85 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_86 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_87 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_88 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_89 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_90 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_91 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_92 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_93 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_94 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_95 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_96 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_97 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_98 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_99 | 1.0 | 0.0 | 1.0 |
| JMMLBCJL_100 | 0.0 | 1.0 | 0.0 |
| JMMLBCJL_101 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JMMLBCJL_10 | 41852 | 53843 | False | Unknown | VOG4568, |
| JMMLBCJL_23 | 33242 | 36613 | False | Siphoviridae | VOG4552, |
| JMMLBCJL_25 | 13047 | 21803 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)