Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CEECFNAA_1 | 143063 | 142362 | WalR | 3.09e-112 | transcriptional regulatory protein | 83.76 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CEECFNAA_7 | 34401 | 35302 | rep38 | 903 / 903 | 98.89 | CP005943 |
| CEECFNAA_5 | 14744 | 15673 | rep28 | 930 / 930 | 98.17 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEECFNAA_1 | 0.0 | 1.0 | 0.0 |
| CEECFNAA_2 | 0.0 | 1.0 | 0.0 |
| CEECFNAA_3 | 1.0 | 0.0 | 1.0 |
| CEECFNAA_4 | 1.0 | 0.0 | 1.0 |
| CEECFNAA_5 | 1.0 | 0.0 | 1.0 |
| CEECFNAA_6 | 1.0 | 0.0 | 1.0 |
| CEECFNAA_7 | 1.0 | 0.0 | 1.0 |
| CEECFNAA_8 | 1.0 | 0.0 | 1.0 |
| CEECFNAA_9 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEECFNAA_1 | 144312 | 155125 | False | Siphoviridae | VOG0198, VOG0204, VOG4553, VOG4568, VOG4556, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4609, VOG4632 |
| CEECFNAA_1 | 1576521 | 1588274 | False | Siphoviridae | VOG6005, VOG0198, VOG4841, VOG0741, VOG4581, VOG1886, VOG7454, VOG0202, VOG4556, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207 |
| CEECFNAA_1 | 2198091 | 2216134 | False | Siphoviridae | VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG0562, VOG4553, VOG4573 |
| CEECFNAA_1 | 2223144 | 2232619 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG4548, VOG0321, VOG0321, VOG8925, VOG0181, VOG8222, VOG1563, VOG8520 |
| CEECFNAA_2 | 1121 | 15994 | False | Siphoviridae | VOG6163, VOG0801, VOG4619, VOG4763, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG0275, VOG4694 |
Phigaro v2.4.0 (Database: Jan. 2024 release)