Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LKEGANCP_4234340233636WalR2.07e-114transcriptional regulatory protein84.25100.00EPH95667
LKEGANCP_3175840175646CspR1.88e-29cold shock protein84.6198.48AAO82613
LKEGANCP_3175840175643CspA2.88e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
LKEGANCP_1532754210rep28937 / 93681.54CP005948
LKEGANCP_141091911953rep381044 / 110481.32CP002655

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LKEGANCP_10.01.00.0
LKEGANCP_20.01.00.0
LKEGANCP_30.01.00.0
LKEGANCP_40.01.00.0
LKEGANCP_50.01.00.0
LKEGANCP_60.01.00.0
LKEGANCP_70.01.00.0
LKEGANCP_80.01.00.0
LKEGANCP_90.01.00.0
LKEGANCP_100.01.00.0
LKEGANCP_110.01.00.0
LKEGANCP_120.01.00.0
LKEGANCP_131.00.01.0
LKEGANCP_141.00.01.0
LKEGANCP_151.00.01.0
LKEGANCP_161.00.01.0
LKEGANCP_171.00.01.0
LKEGANCP_181.00.01.0
LKEGANCP_191.00.01.0
LKEGANCP_201.00.01.0
LKEGANCP_211.00.01.0
LKEGANCP_221.00.01.0
LKEGANCP_230.01.00.0
LKEGANCP_241.00.01.0
LKEGANCP_251.00.01.0
LKEGANCP_261.00.01.0
LKEGANCP_271.00.01.0
LKEGANCP_281.00.01.0
LKEGANCP_291.00.01.0
LKEGANCP_301.00.01.0
LKEGANCP_311.00.01.0
LKEGANCP_331.00.01.0
LKEGANCP_341.00.01.0
LKEGANCP_351.00.01.0
LKEGANCP_361.00.01.0
LKEGANCP_371.00.01.0
LKEGANCP_381.00.01.0
LKEGANCP_391.00.01.0
LKEGANCP_401.00.01.0
LKEGANCP_411.00.01.0
LKEGANCP_421.00.01.0
LKEGANCP_431.00.01.0
LKEGANCP_441.00.01.0
LKEGANCP_451.00.01.0
LKEGANCP_461.00.01.0
LKEGANCP_471.00.01.0
LKEGANCP_481.00.01.0
LKEGANCP_491.00.01.0
LKEGANCP_501.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LKEGANCP_2150009159810FalseSiphoviridaeVOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632
LKEGANCP_92843336180FalseSiphoviridaeVOG1563, VOG8222, VOG8925, VOG0321, VOG4548, VOG9667, VOG0322, VOG6545, VOG4632
LKEGANCP_94421863399FalseSiphoviridaeVOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917
LKEGANCP_11956136044FalseSiphoviridaeVOG4693, VOG0159, VOG6970, VOG0044, VOG1049, VOG0198, VOG0638, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG9657, VOG8438, VOG4334

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements