Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NEFDNOBA_3 | 336101 | 335397 | WalR | 2.03e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NEFDNOBA_2 | 252728 | 252534 | CspR | 2.23e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NEFDNOBA_2 | 252728 | 252531 | CspA | 3.41e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NEFDNOBA_24 | 1381 | 1890 | repUS54 | 513 / 690 | 85.38 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEFDNOBA_1 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_2 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_3 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_4 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_5 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_6 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_7 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_8 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_9 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_10 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_11 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_12 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_13 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_14 | 1.0 | 0.0 | 1.0 |
| NEFDNOBA_15 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_16 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_17 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_18 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_19 | 1.0 | 0.0 | 1.0 |
| NEFDNOBA_20 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_21 | 1.0 | 0.0 | 1.0 |
| NEFDNOBA_22 | 0.0 | 1.0 | 0.0 |
| NEFDNOBA_24 | 1.0 | 0.0 | 1.0 |
| NEFDNOBA_26 | 1.0 | 0.0 | 1.0 |
| NEFDNOBA_27 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEFDNOBA_1 | 595233 | 637557 | False | Siphoviridae | VOG3443, VOG1191, VOG1521, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154, VOG1637, VOG4673, VOG3643, VOG0044, VOG0044, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG10904, VOG4548, VOG0321, VOG3876, VOG8925, VOG0181, VOG8222, VOG8520, VOG4602 |
| NEFDNOBA_3 | 337638 | 347070 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| NEFDNOBA_4 | 122183 | 156159 | False | Siphoviridae | VOG9655, VOG0181, VOG7298, VOG1309, VOG0186, VOG6495, VOG4566, VOG4693, VOG0586, VOG5047, VOG0198, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498 |
| NEFDNOBA_6 | 137925 | 163351 | False | Siphoviridae | VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG4686, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| NEFDNOBA_10 | 2934 | 38501 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG0701, VOG8134, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG0796, VOG0198, VOG1049, VOG0044, VOG3691, VOG1297, VOG3480, VOG4693, VOG4855, VOG0186, VOG1309, VOG0650, VOG3549, VOG8615, VOG6139, VOG2786 |
Phigaro v2.4.0 (Database: Jan. 2024 release)