Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ILNIIPBO_1 | 140395 | 141045 | vatH | ARO:3002845 | vatH | 99.54 | 100.00 | GQ205627.2 |
| ILNIIPBO_1 | 138752 | 140329 | vgaD | ARO:3002832 | vgaD | 99.81 | 100.00 | GQ205627.1 |
| ILNIIPBO_2 | 35259 | 36698 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 99.79 | 100.00 | GU565967.1 |
| ILNIIPBO_2 | 33898 | 34761 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
| ILNIIPBO_3 | 26421 | 28046 | poxtA | ARO:3004470 | poxtA | 99.08 | 99.82 | MF095097.1 |
| ILNIIPBO_3 | 22865 | 24274 | fexB | ARO:3007019 | fexB | 99.57 | 100.00 | JN201336.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ILNIIPBO_2 | 33898 | 34761 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| ILNIIPBO_2 | 35259 | 36698 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 99.93 | 100.00 | M13771 |
| ILNIIPBO_1 | 138752 | 140329 | vga(D) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 99.87 | 100.00 | GQ205627 |
| ILNIIPBO_3 | 22865 | 24274 | fexB | Chloramphenicol, Florfenicol | 99.86 | 100.00 | JN201336 |
| ILNIIPBO_1 | 140395 | 141045 | vat(H) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 99.85 | 100.00 | GQ205627 |
| ILNIIPBO_3 | 26421 | 28042 | poxtA | Chloramphenicol, Florfenicol, Linezolid, Doxycycline, Tetracycline | 99.69 | 99.57 | MF095097 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ILNIIPBO_2 | 33898 | 34758 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| ILNIIPBO_1 | 138752 | 140326 | vga(D) | ABC-F type ribosomal protection protein Vga(D) | BLASTX | 99.81 | 100.00 | WP_063856938.1 |
| ILNIIPBO_2 | 35259 | 36695 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | BLASTX | 99.79 | 100.00 | WP_001028144.1 |
| ILNIIPBO_3 | 22865 | 24271 | fexB | chloramphenicol/florfenicol efflux MFS transporter FexB | BLASTX | 99.57 | 100.00 | WP_002415211.1 |
| ILNIIPBO_1 | 140395 | 141042 | vat(H) | streptogramin A O-acetyltransferase Vat(H) | BLASTX | 99.54 | 100.00 | WP_063856935.1 |
| ILNIIPBO_3 | 26421 | 28043 | poxtA | ABC-F type ribosomal protection protein PoxtA | BLASTX | 99.08 | 99.82 | WP_002415638.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ILNIIPBO_1 | 49361 | 50068 | WalR | 5.88e-115 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ILNIIPBO_3 | 33612 | 35105 | rep2 | 1494 / 1494 | 100.00 | X92945 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ILNIIPBO_1 | 0.0 | 1.0 | 0.0 |
| ILNIIPBO_2 | 1.0 | 0.0 | 1.0 |
| ILNIIPBO_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)