Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FEFLPNNF_34 | 13131 | 14507 | tet(L) | ARO:3000179 | tet(L) | 98.25 | 100.00 | M11036.1 |
| FEFLPNNF_34 | 11012 | 12937 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| FEFLPNNF_35 | 4330 | 5061 | ErmC | ARO:3000250 | ErmC | 95.02 | 99.59 | M12730.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FEFLPNNF_34 | 13132 | 14507 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 99.93 | AY081910 |
| FEFLPNNF_34 | 11012 | 12937 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
| FEFLPNNF_35 | 4333 | 5061 | erm(C) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.45 | 99.18 | Y09003 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FEFLPNNF_35 | 4336 | 5058 | erm(C) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) | BLASTX | 99.59 | 98.77 | WP_032492416.1 |
| FEFLPNNF_34 | 11012 | 12934 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| FEFLPNNF_34 | 13131 | 14504 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FEFLPNNF_18 | 28434 | 29141 | WalR | 1.72e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| FEFLPNNF_1 | 139561 | 139758 | CspR | 3.47e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| FEFLPNNF_1 | 139561 | 139755 | CspA | 1.69e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FEFLPNNF_1 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_2 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_3 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_4 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_5 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_6 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_7 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_8 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_9 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_10 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_11 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_12 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_13 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_14 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_15 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_16 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_17 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_18 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_19 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_20 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_21 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_22 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_23 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_24 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_25 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_26 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_27 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_28 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_29 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_30 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_31 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_32 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_33 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_34 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_35 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_36 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_37 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_38 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_39 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_40 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_41 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_42 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_44 | 0.0 | 1.0 | 0.0 |
| FEFLPNNF_45 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_46 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_47 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_51 | 1.0 | 0.0 | 1.0 |
| FEFLPNNF_53 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FEFLPNNF_11 | 6456 | 12377 | False | Myoviridae | VOG9667, VOG7236, VOG0198, VOG1309, VOG0186, VOG5228, VOG4566, VOG0189 |
| FEFLPNNF_11 | 20578 | 39436 | False | Siphoviridae | VOG8681, VOG0689, VOG9503, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)