Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJIDEKPI_2 | 7059 | 7543 | lnu(A) | Lincomycin | 98.56 | 99.79 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJIDEKPI_2 | 7127 | 7540 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | PARTIALX | 93.66 | 88.20 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJIDEKPI_1 | 0.0 | 1.0 | 0.0 |
| JJIDEKPI_2 | 1.0 | 0.0 | 1.0 |
| JJIDEKPI_3 | 1.0 | 0.0 | 1.0 |
| JJIDEKPI_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJIDEKPI_1 | 141340 | 164929 | True | Siphoviridae | VOG0221, VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG4553, VOG4573, VOG4556, VOG1886, VOG1448, VOG4571, VOG4618, VOG4581, VOG4548, VOG0327, VOG4606, VOG4632, VOG0026, VOG0021, VOG1047, VOG7438 |
| JJIDEKPI_1 | 187104 | 195542 | False | Siphoviridae | VOG0221, VOG9409, VOG0641, VOG0204, VOG4553, VOG0350, VOG9671, VOG1344 |
| JJIDEKPI_1 | 756814 | 786378 | True | Siphoviridae | VOG1198, VOG1198, VOG1198, VOG8473, VOG4824, VOG0054, VOG1637, VOG5008, VOG7454, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG1026, VOG4357, VOG0539, VOG4589, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841 |
| JJIDEKPI_1 | 791492 | 801836 | False | Siphoviridae | VOG5280, VOG5562, VOG5998, VOG10903, VOG0275, VOG0195, VOG3478, VOG7673, VOG2147, VOG8520, VOG0862, VOG9312 |
Phigaro v2.4.0 (Database: Jan. 2024 release)