Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCPOCIPA_2 | 63300 | 62596 | WalR | 6.72e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| KCPOCIPA_16 | 17665 | 17468 | CspR | 4.90e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCPOCIPA_2 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_3 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_4 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_5 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_6 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_7 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_8 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_9 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_10 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_11 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_12 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_13 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_14 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_15 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_16 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_17 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_18 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_19 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_20 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_21 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_22 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_23 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_24 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_25 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_26 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_27 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_28 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_29 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_30 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_31 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_32 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_33 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_34 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_35 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_36 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_37 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_38 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_39 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_40 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_41 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_42 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_44 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_45 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_46 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_47 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_48 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_49 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_50 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_51 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_52 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_53 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_54 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_55 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_56 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_57 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_59 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_60 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_61 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_62 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_63 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_64 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_65 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_66 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_67 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_68 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_69 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_70 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_71 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_72 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_73 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_74 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_75 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_76 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_77 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_78 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_79 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_80 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_81 | 1.0 | 0.0 | 1.0 |
| KCPOCIPA_89 | 0.0 | 1.0 | 0.0 |
| KCPOCIPA_100 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCPOCIPA_4 | 1066 | 12811 | False | Siphoviridae | VOG5562, VOG6795, VOG5998, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG4967, VOG6450, VOG10867, VOG0181, VOG10059, VOG8520, VOG0862 |
| KCPOCIPA_20 | 19323 | 28839 | False | Siphoviridae | VOG4602, VOG6495, VOG5353, VOG4552, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG7363, VOG5998, VOG5562 |
| KCPOCIPA_78 | 37005 | 47754 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)