Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPOBONDE_35 | 2 | 1240 | tet(Q) | ARO:3000191 | tet(Q) | 96.02 | 62.71 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPOBONDE_35 | 3 | 1206 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.83 | 62.51 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPOBONDE_35 | 2 | 1207 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.00 | 62.71 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IPOBONDE_7 | 101014 | 99434 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IPOBONDE_1 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_2 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_3 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_4 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_5 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_6 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_7 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_8 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_9 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_10 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_11 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_12 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_13 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_14 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_15 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_16 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_17 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_18 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_19 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_20 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_21 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_22 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_23 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_24 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_25 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_26 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_27 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_28 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_29 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_30 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_31 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_32 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_33 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_34 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_35 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_36 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_37 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_39 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_40 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_41 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_42 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_43 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_44 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_45 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_46 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_47 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_48 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_49 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_50 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_51 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_52 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_53 | 1.0 | 0.0 | 1.0 |
| IPOBONDE_54 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_55 | 0.0 | 1.0 | 0.0 |
| IPOBONDE_56 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IPOBONDE_1 | 322226 | 335367 | False | Siphoviridae | VOG6280, |
| IPOBONDE_3 | 5443 | 9081 | False | Myoviridae | VOG8201, |
| IPOBONDE_3 | 95447 | 99667 | False | Myoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)