Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNFGKLCP_16 | 126621 | 128546 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| NNFGKLCP_25 | 76346 | 77083 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
| NNFGKLCP_32 | 71159 | 72124 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NNFGKLCP_16 | 126621 | 128546 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| NNFGKLCP_32 | 71159 | 72124 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| NNFGKLCP_25 | 76346 | 77083 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| NNFGKLCP_25 | 66514 | 67731 | mef(A) | Erythromycin, Azithromycin | 96.22 | 100.00 | U83667 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNFGKLCP_25 | 73062 | 73835 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| NNFGKLCP_32 | 71162 | 72124 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| NNFGKLCP_16 | 126624 | 128546 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| NNFGKLCP_25 | 76349 | 77083 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| NNFGKLCP_25 | 66517 | 67731 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.27 | 100.00 | WP_024127829.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NNFGKLCP_1 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_2 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_3 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_4 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_5 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_6 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_7 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_8 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_9 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_10 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_11 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_12 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_13 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_14 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_15 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_16 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_17 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_18 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_19 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_20 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_21 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_22 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_23 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_24 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_25 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_26 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_27 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_28 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_29 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_30 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_31 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_32 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_33 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_34 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_35 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_36 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_37 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_38 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_39 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_40 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_41 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_42 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_43 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_44 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_45 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_46 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_47 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_48 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_49 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_50 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_51 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_52 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_53 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_54 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_55 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_56 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_57 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_58 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_59 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_60 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_61 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_62 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_63 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_64 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_65 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_66 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_67 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_68 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_69 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_70 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_71 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_72 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_73 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_74 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_75 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_76 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_77 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_78 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_80 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_81 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_82 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_83 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_84 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_85 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_86 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_87 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_88 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_89 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_90 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_91 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_92 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_93 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_94 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_95 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_97 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_98 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_99 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_100 | 0.0 | 1.0 | 0.0 |
| NNFGKLCP_101 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_102 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_103 | 1.0 | 0.0 | 1.0 |
| NNFGKLCP_104 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NNFGKLCP_19 | 47377 | 54025 | False | Siphoviridae | VOG4544, |
| NNFGKLCP_23 | 77687 | 83015 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)