Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBNEEANF_6 | 189062 | 188358 | WalR | 1.25e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LBNEEANF_14 | 5502 | 5696 | CspR | 4.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LBNEEANF_14 | 5502 | 5699 | CspA | 6.42e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBNEEANF_1 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_2 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_3 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_4 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_5 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_6 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_7 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_8 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_9 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_10 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_11 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_12 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_13 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_14 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_15 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_16 | 1.0 | 0.0 | 1.0 |
| LBNEEANF_17 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_18 | 0.0 | 1.0 | 0.0 |
| LBNEEANF_19 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBNEEANF_2 | 237973 | 244716 | False | Siphoviridae | VOG4602, VOG6495, VOG6495, VOG2703, VOG1309, VOG0186, VOG4855, VOG4693 |
| LBNEEANF_2 | 248315 | 271123 | False | Siphoviridae | VOG0198, VOG0608, VOG1183, VOG9846, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG4619, VOG4856, VOG8917 |
| LBNEEANF_2 | 296450 | 302591 | False | Siphoviridae | VOG11003, VOG6495, VOG9655, VOG0181, VOG7298, VOG2703, VOG1309, VOG0186 |
| LBNEEANF_2 | 306115 | 329124 | False | Siphoviridae | VOG5616, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG9583, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG3462, VOG3463, VOG4687, VOG10251, VOG10251 |
| LBNEEANF_6 | 191814 | 200576 | False | Siphoviridae | VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)