Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JCPDGGFM_6 | 37564 | 38268 | WalR | 1.25e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JCPDGGFM_3 | 89475 | 89281 | CspR | 1.64e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JCPDGGFM_3 | 89475 | 89278 | CspA | 2.52e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JCPDGGFM_1 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_2 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_3 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_4 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_5 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_6 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_7 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_8 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_9 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_10 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_11 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_12 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_13 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_14 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_15 | 1.0 | 0.0 | 1.0 |
| JCPDGGFM_16 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_17 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_18 | 0.0 | 1.0 | 0.0 |
| JCPDGGFM_19 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JCPDGGFM_2 | 238021 | 244764 | False | Siphoviridae | VOG4602, VOG6495, VOG6495, VOG2703, VOG1309, VOG0186, VOG4855, VOG4693 |
| JCPDGGFM_2 | 248363 | 271171 | False | Siphoviridae | VOG0198, VOG0608, VOG1183, VOG9846, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG4619, VOG4856, VOG8917 |
| JCPDGGFM_2 | 296498 | 302639 | False | Siphoviridae | VOG11003, VOG6495, VOG9655, VOG0181, VOG7298, VOG2703, VOG1309, VOG0186 |
| JCPDGGFM_2 | 306163 | 329172 | False | Siphoviridae | VOG5616, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG9583, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG3462, VOG3463, VOG4687, VOG10251, VOG10251 |
| JCPDGGFM_6 | 26050 | 34812 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4553 |
Phigaro v2.4.0 (Database: Jan. 2024 release)