Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPFKDMEA_5 | 31847 | 35410 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| FPFKDMEA_22 | 6952 | 8871 | tet(W) | ARO:3000194 | tet(W) | 97.65 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FPFKDMEA_40 | 411 | 1489 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 99.91 | 74.93 | M13771 |
| FPFKDMEA_40 | 411 | 1489 | aph(2'')-Ia | Amikacin, Gentamicin, Tobramycin, Kanamycin | 99.91 | 73.10 | AP009486 |
| FPFKDMEA_22 | 6952 | 8871 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.59 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FPFKDMEA_22 | 6955 | 8871 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 100.00 | WP_033493020.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FPFKDMEA_1 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_2 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_3 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_4 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_5 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_6 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_7 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_8 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_9 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_10 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_11 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_12 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_13 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_14 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_15 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_16 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_17 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_18 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_19 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_20 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_21 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_22 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_23 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_24 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_25 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_26 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_27 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_28 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_30 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_31 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_32 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_33 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_34 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_35 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_36 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_37 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_38 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_39 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_40 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_41 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_42 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_44 | 1.0 | 0.0 | 1.0 |
| FPFKDMEA_45 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_46 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_52 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_62 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_64 | 0.0 | 1.0 | 0.0 |
| FPFKDMEA_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FPFKDMEA_41 | 121017 | 140304 | False | Unknown | VOG1026, VOG4972, VOG0705, VOG0705, VOG0021, VOG6495, VOG4708, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)