Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CNPJENMI_1 | 2893444 | 2892740 | WalR | 8.08e-111 | transcriptional regulatory protein | 82.98 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNPJENMI_1 | 0.0 | 1.0 | 0.0 |
| CNPJENMI_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNPJENMI_1 | 910034 | 943009 | False | Siphoviridae | VOG8520, VOG8520, VOG7236, VOG10397, VOG0707, VOG9846, VOG0181, VOG10867, VOG3642, VOG4799, VOG0189, VOG0982, VOG6140, VOG0198, VOG5088, VOG9741, VOG4570, VOG4549, VOG1345, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703 |
| CNPJENMI_1 | 1191678 | 1224377 | False | Siphoviridae | VOG4855, VOG0189, VOG9860, VOG6623, VOG4693, VOG0198, VOG1315, VOG4403, VOG5088, VOG4570, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4605, VOG4599, VOG5088, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG8294 |
| CNPJENMI_1 | 2006332 | 2039015 | False | Siphoviridae | VOG2090, VOG9086, VOG0979, VOG4649, VOG0602, VOG6540, VOG9955, VOG9998, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699, VOG4570, VOG4694, VOG0198, VOG4214, VOG0102, VOG3643 |
Phigaro v2.4.0 (Database: Jan. 2024 release)