Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMLAPCJH_45 | 121205 | 122410 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMLAPCJH_45 | 122435 | 122944 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| IMLAPCJH_45 | 121205 | 122407 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMLAPCJH_1 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_2 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_3 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_4 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_5 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_6 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_7 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_8 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_9 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_10 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_11 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_12 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_13 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_14 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_15 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_16 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_17 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_18 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_19 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_20 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_21 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_22 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_23 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_24 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_25 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_26 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_27 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_28 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_29 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_30 | 1.0 | 0.0 | 1.0 |
| IMLAPCJH_31 | 1.0 | 0.0 | 1.0 |
| IMLAPCJH_32 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_33 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_34 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_35 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_36 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_37 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_38 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_39 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_40 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_41 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_42 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_43 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_44 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_45 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_46 | 0.0 | 1.0 | 0.0 |
| IMLAPCJH_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMLAPCJH_23 | 163913 | 167561 | False | Unknown | VOG4544, |
| IMLAPCJH_39 | 25833 | 34615 | False | Siphoviridae | VOG4581, |
| IMLAPCJH_42 | 28894 | 33881 | False | Unknown | VOG8302, |
Phigaro v2.4.0 (Database: Jan. 2024 release)