Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIEEFLKJ_41 | 36209 | 37174 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HIEEFLKJ_41 | 36209 | 37174 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| HIEEFLKJ_41 | 36209 | 37174 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| HIEEFLKJ_41 | 36209 | 37174 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| HIEEFLKJ_41 | 36209 | 37174 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIEEFLKJ_41 | 36209 | 37171 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HIEEFLKJ_8 | 86307 | 87887 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIEEFLKJ_1 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_2 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_3 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_4 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_5 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_6 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_7 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_8 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_9 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_10 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_11 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_12 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_13 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_14 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_15 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_16 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_17 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_18 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_19 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_20 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_21 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_22 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_23 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_24 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_25 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_26 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_27 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_28 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_29 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_30 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_31 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_32 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_33 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_34 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_35 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_36 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_37 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_38 | 1.0 | 0.0 | 1.0 |
| HIEEFLKJ_39 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_40 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_41 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_42 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_43 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_44 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_45 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_46 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_47 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_48 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_49 | 0.0 | 1.0 | 0.0 |
| HIEEFLKJ_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIEEFLKJ_28 | 32037 | 46308 | False | Siphoviridae | VOG10980, |
| HIEEFLKJ_46 | 140249 | 156586 | False | Unknown | VOG7553, |
Phigaro v2.4.0 (Database: Jan. 2024 release)