Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECKOEBKE_47 | 232392 | 233246 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.77 | M17124.1 |
| ECKOEBKE_47 | 231365 | 232189 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ECKOEBKE_47 | 231365 | 232189 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| ECKOEBKE_47 | 232392 | 233192 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECKOEBKE_47 | 231365 | 232186 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| ECKOEBKE_47 | 232395 | 233192 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECKOEBKE_1 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_2 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_3 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_4 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_5 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_6 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_7 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_8 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_9 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_10 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_11 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_12 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_13 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_14 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_15 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_16 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_17 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_18 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_19 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_20 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_21 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_22 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_23 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_24 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_25 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_26 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_27 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_28 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_29 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_30 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_31 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_32 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_33 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_34 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_35 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_36 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_37 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_38 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_39 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_40 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_41 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_42 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_43 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_44 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_45 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_46 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_47 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_48 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_49 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_50 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_51 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_52 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_53 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_54 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_55 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_56 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_57 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_58 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_59 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_60 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_61 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_62 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_63 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_64 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_65 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_66 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_67 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_68 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_69 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_70 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_71 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_72 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_73 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_74 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_75 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_76 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_77 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_78 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_79 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_80 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_81 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_82 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_83 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_84 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_85 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_86 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_87 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_88 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_89 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_90 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_91 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_92 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_93 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_94 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_95 | 1.0 | 0.0 | 1.0 |
| ECKOEBKE_96 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_97 | 0.0 | 1.0 | 0.0 |
| ECKOEBKE_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ECKOEBKE_32 | 13214 | 20758 | False | Siphoviridae | VOG7238, |
| ECKOEBKE_86 | 46475 | 51736 | False | Unknown | VOG4755, |
Phigaro v2.4.0 (Database: Jan. 2024 release)