Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHDIEEIK_34 | 134121 | 136046 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHDIEEIK_34 | 134121 | 136046 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHDIEEIK_34 | 134121 | 136043 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GHDIEEIK_34 | 188927 | 187347 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHDIEEIK_1 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_2 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_3 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_4 | 1.0 | 0.0 | 1.0 |
| GHDIEEIK_5 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_6 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_7 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_8 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_9 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_10 | 1.0 | 0.0 | 1.0 |
| GHDIEEIK_11 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_12 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_13 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_14 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_15 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_16 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_17 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_18 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_19 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_20 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_21 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_22 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_23 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_24 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_25 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_26 | 1.0 | 0.0 | 1.0 |
| GHDIEEIK_27 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_28 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_29 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_30 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_31 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_32 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_33 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_34 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_35 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_36 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_37 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_38 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_39 | 1.0 | 0.0 | 1.0 |
| GHDIEEIK_40 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_41 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_42 | 1.0 | 0.0 | 1.0 |
| GHDIEEIK_43 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_44 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_45 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_46 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_47 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_48 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_49 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_50 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_51 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_52 | 0.0 | 1.0 | 0.0 |
| GHDIEEIK_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHDIEEIK_2 | 81888 | 91631 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)