Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDPJLOPE_28 | 164468 | 165430 | CfxA6 | ARO:3003097 | CfxA6 | 99.69 | 96.68 | GQ342996.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IDPJLOPE_28 | 164468 | 165458 | cfxA6 | Unknown Beta-lactam | 99.90 | 99.50 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDPJLOPE_28 | 164471 | 165430 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 99.69 | 100.00 | WP_117664257.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDPJLOPE_1 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_2 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_3 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_4 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_5 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_6 | 1.0 | 0.0 | 1.0 |
| IDPJLOPE_7 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_8 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_9 | 1.0 | 0.0 | 1.0 |
| IDPJLOPE_10 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_11 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_12 | 1.0 | 0.0 | 1.0 |
| IDPJLOPE_13 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_14 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_15 | 1.0 | 0.0 | 1.0 |
| IDPJLOPE_16 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_17 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_18 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_19 | 1.0 | 0.0 | 1.0 |
| IDPJLOPE_20 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_21 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_22 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_23 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_24 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_25 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_26 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_27 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_28 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_29 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_31 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_32 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_33 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_34 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_35 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_36 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_37 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_38 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_39 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_40 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_41 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_42 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_43 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_44 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_45 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_46 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_47 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_48 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_49 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_50 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_51 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_52 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_53 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_54 | 1.0 | 0.0 | 1.0 |
| IDPJLOPE_55 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_56 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_57 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_58 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_59 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_60 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_61 | 0.0 | 1.0 | 0.0 |
| IDPJLOPE_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IDPJLOPE_45 | 170639 | 177816 | False | Siphoviridae | VOG4581, |
| IDPJLOPE_59 | 65647 | 73832 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)