Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IODHEJJJ_6 | 85406 | 86986 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IODHEJJJ_1 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_2 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_3 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_4 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_5 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_6 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_7 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_8 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_9 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_10 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_11 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_12 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_13 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_15 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_16 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_17 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_18 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_19 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_20 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_21 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_22 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_23 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_24 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_26 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_27 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_28 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_29 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_30 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_31 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_32 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_33 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_34 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_35 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_36 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_37 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_38 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_39 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_40 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_41 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_42 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_43 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_44 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_45 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_46 | 1.0 | 0.0 | 1.0 |
| IODHEJJJ_47 | 0.0 | 1.0 | 0.0 |
| IODHEJJJ_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IODHEJJJ_33 | 5947 | 15698 | True | Unknown | VOG8253, |
| IODHEJJJ_43 | 77271 | 91805 | False | Unknown | VOG0982, |
Phigaro v2.4.0 (Database: Jan. 2024 release)