Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFKMCGCK_68 | 15967 | 16701 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| OFKMCGCK_16 | 6545 | 8470 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OFKMCGCK_16 | 6545 | 8470 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| OFKMCGCK_68 | 15967 | 16701 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFKMCGCK_16 | 6545 | 8467 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OFKMCGCK_68 | 15967 | 16698 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_014387027.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OFKMCGCK_8 | 1192 | 2772 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OFKMCGCK_1 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_2 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_3 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_4 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_5 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_6 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_7 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_8 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_9 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_10 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_11 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_12 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_13 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_14 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_15 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_16 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_17 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_18 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_19 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_20 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_21 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_22 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_23 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_24 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_25 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_26 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_27 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_28 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_29 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_30 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_31 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_32 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_33 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_34 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_35 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_36 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_37 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_38 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_40 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_41 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_42 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_43 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_44 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_45 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_46 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_47 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_48 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_50 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_51 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_52 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_53 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_54 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_55 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_56 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_57 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_58 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_59 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_60 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_61 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_62 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_63 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_64 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_65 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_66 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_67 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_68 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_69 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_70 | 1.0 | 0.0 | 1.0 |
| OFKMCGCK_71 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_72 | 0.0 | 1.0 | 0.0 |
| OFKMCGCK_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OFKMCGCK_67 | 6836 | 15340 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)