Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHDJAPOD_32 | 58374 | 60320 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| NHDJAPOD_49 | 5228 | 6190 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 106.67 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHDJAPOD_49 | 5288 | 6190 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| NHDJAPOD_32 | 58374 | 60286 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHDJAPOD_49 | 5288 | 6187 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| NHDJAPOD_32 | 58374 | 60287 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHDJAPOD_1 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_2 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_3 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_4 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_5 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_6 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_7 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_8 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_9 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_10 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_11 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_12 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_13 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_14 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_15 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_16 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_17 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_18 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_19 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_20 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_21 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_22 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_23 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_24 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_25 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_26 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_27 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_28 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_29 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_30 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_31 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_32 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_33 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_34 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_35 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_36 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_37 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_38 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_39 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_40 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_41 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_42 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_43 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_44 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_45 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_46 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_47 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_48 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_49 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_50 | 1.0 | 0.0 | 1.0 |
| NHDJAPOD_51 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_52 | 0.0 | 1.0 | 0.0 |
| NHDJAPOD_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NHDJAPOD_2 | 2135 | 10624 | False | Siphoviridae | VOG4581, |
| NHDJAPOD_42 | 51577 | 58318 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)