Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMLMGFNH_28 | 327018 | 327803 | ErmF | ARO:3000498 | ErmF | 99.23 | 98.12 | M17124.1 |
| KMLMGFNH_28 | 325669 | 326805 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| KMLMGFNH_28 | 322998 | 324923 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| KMLMGFNH_14 | 120550 | 121452 | CepA-44 | ARO:3006225 | CepA-44 | 99.67 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KMLMGFNH_28 | 325639 | 326805 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| KMLMGFNH_14 | 120550 | 121452 | cepA-44 | Unknown Beta-lactam | 99.89 | 100.00 | U05885 |
| KMLMGFNH_28 | 327018 | 327819 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| KMLMGFNH_28 | 322998 | 324923 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.61 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMLMGFNH_28 | 327021 | 327812 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 100.00 | 99.25 | WP_002682030.1 |
| KMLMGFNH_28 | 325639 | 326802 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| KMLMGFNH_14 | 120550 | 121449 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_032579291.1 |
| KMLMGFNH_28 | 322998 | 324920 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMLMGFNH_1 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_2 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_3 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_4 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_5 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_6 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_7 | 1.0 | 0.0 | 1.0 |
| KMLMGFNH_8 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_9 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_10 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_11 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_13 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_14 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_15 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_16 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_17 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_18 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_19 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_20 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_21 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_22 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_23 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_24 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_25 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_26 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_27 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_28 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_29 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_30 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_31 | 0.0 | 1.0 | 0.0 |
| KMLMGFNH_32 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)